The problem you are having is something quite recent in pinball, and it appears to me that the brass alloy that a Stern's supplier is using is too brittle in the construction of the coil stop.
With a modest amount of hits, the brass of the coil stop shatters into little bits of shiny metal dust that hits the bottom of the game, allowing the 'slug' to be loose and eventually cause flipper problems.
I suspect that Stern is getting parts from multiple suppliers, because as a Stern Dealer, I've had batches of Stern Pinballs come in with no problems and batches of Stern pinballs come in that every machine has compromised coil stops.
I think you were just unlucky, and got some parts that weren't made with the right materials.
It's annoying. But it's not the hardest thing to fix. With replacement coil stops (I buy from Pinball Life), four year old games that have had a LOT of play don't have flipper coil stop problems... yet.
Eventually they'll get pounded down and I'll rebuild the flippers, but this is usually after several years of use.